PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 353aa    MW: 38506 Da    PI: 7.3694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011980.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l ++++ +G g+W++ ++  g+ R++k+c++rw +yl
      Pbr011980.1 14 RGKWTAEEDEILTKYIHAHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding56.65.8e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +v++++ lG++ W++Ia++++ gRt++ +k++w+++l
      Pbr011980.1  67 RGNFTAEEEETIVKLHTALGNR-WSLIAAHLP-GRTDNGIKNYWNSHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.233961IPR017930Myb domain
SuperFamilySSF466895.99E-2911108IPR009057Homeodomain-like
SMARTSM007173.4E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001673.81E-101661No hitNo description
PROSITE profilePS5129425.50362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565116IPR009057Homeodomain-like
SMARTSM007175.0E-1566114IPR001005SANT/Myb domain
PfamPF002494.5E-1567112IPR001005SANT/Myb domain
CDDcd001674.37E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRAPCCEKL GLKRGKWTAE EDEILTKYIH AHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRAELKRGNF TAEEEETIVK LHTALGNRWS LIAAHLPGRT DNGIKNYWNS HLSRKIYSFI  120
KVGNEHLPSI LNDVKKITSC NKRCKGARAS ISTMNKKSKN KNLAPFNSRK SEANPQLGNP  180
SLPTGTIINL GQVGNEDSNL RGLESWDPIK NGDGEAIGML GTQSSCLHSA EMINFDPCGE  240
QKKSAQLCLG KKENNITSSS TAIYGDNDCE TEVLGTSCEC VDTMDQNNNI VENEERRSTG  300
IWSSSNAAES GGGGGGGELY SFASSMNSGF DDEWLNWGWA GGGLQCHNGE LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
1mse_C1e-24121162105C-Myb DNA-Binding Domain
1msf_C1e-24121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369961.10.0PREDICTED: myb-related protein P-like
TrEMBLM5XBH21e-123M5XBH2_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-75myb domain protein 111